Healthy Whole Grain Zucchini Muffins

Whole Grain Zucchini Muffins are made with whole grains, natural sweeteners, and vegetables. These healthy zucchini muffins make a nutritious breakfast, and they’re perfect if you’re on the go! Your whole family will love them!

We have lots of muffin recipes that you really need to try. Healthy Carrot Cake Zucchini Muffins, Pineapple Zucchini Muffins and Healthy Apple Cinnamon Muffins (Made in the Blender!) will be worth your while.

These Whole Grain Zucchini Muffins are made with whole grains, natural sweeteners, and vegetables. Your whole family will love them!

Healthy Zucchini Breakfast Muffin Recipe With Oats

There are few things more delicious than zucchini desserts. I love chocolate zucchini cake, zucchini bread, and of course, zucchini muffins! They are always on my list to make during the summer. I love these simple treats because they are actually healthy! My kids have no idea, and I’m not sad about that. We love these and I make them all of the time!

Here’s what you are going to love about these zucchini muffins: they are made with whole grains, natural sweeteners, and vegetables! What’s not to love? I make these to have with scrambled eggs at breakfast, for standalone snacks, and to serve with dinner when I’m making soup or chili. They freeze great and you can double the recipe without any issues. This is a recipe you are going to come back to again and again.

If you can’t tell, this recipe is very forgiving and delicious! If you don’t have maple syrup on hand, try the honey. If you don’t have coconut oil on hand, try some melted butter. If you you’d like to make this more of a treat, a cup of dark chocolate chips mixed into the batter before baking is perfect. It is great to keep a second batch in the freezer too, for busy mornings. Just let the muffins cool to room temperature, stick them in a zipper-top freezer bag, and freeze for up to a month. Let them thaw at room temperature for about 40 minutes before eating.Whole Grain Zucchini Muffins the whole family will love.

What is the best sweeter to use for these muffins?

When it comes to the natural sweetener, I normally make these with pure maple syrup. It’s light, sweet, and there’s no indication of “maple flavor” in the end product. I have also made these many times with honey instead of maple, or a mix of the two if I’m short on one. The honey muffins have a bit of a honey flavor and seem to be a bit sweeter. Use what you have – we like all of the options!

What type of flour is the best for baking muffins?

When it comes to the whole grains, I use white whole wheat flour plus some old-fashioned oats. White whole wheat flour is a little lighter than a traditional whole wheat flour (which is milled from hard red wheat, whereas the white whole wheat flour is milled from soft white wheat grain). It’s still a great whole grain, but tends to be less “wheaty” in flavor and has a lighter texture when baked. I’d highly recommend reading your labels and finding the white whole wheat flour; it’s perfect for muffins and baked goods.

Does it matter what type of oil you use in muffins?

I have used all kinds of things for the oil in this recipe, too. I normally use a bit of melted coconut oil, but I have also used melted butter and avocado oil too; all of them work well.

Whole Grain Zucchini Muffins

Rack of whole grain zucchini muffins

Healthy Whole Grain Zucchini Muffins

  • Author: Melissa Griffiths-Bless this Mess
  • Prep Time: 10 mins
  • Cook Time: 16 mins
  • Total Time: 26 mins
  • Yield: 12 muffins 1x


Whole Grain Zucchini Muffins are made with whole grains, natural sweeteners, and vegetables. These healthy zucchini muffins make a nutritious breakfast, and they’re perfect if you’re on the go! Your whole family will love them!



  • 1 1/2 cups white whole wheat flour
  • 1 teaspoon baking powder
  • 1 teaspoon baking soda
  • 1 teaspoon ground cinnamon
  • 1/2 teaspoon salt
  • 1 egg
  • 1/2 cup maple syrup or honey
  • 1/3 cup milk (nut or dairy)
  • 1/3 cup melted coconut oil
  • 1 teaspoon vanilla extract
  • 1 1/2 cups grated fresh zucchini
  • 1/2 cups old-fashioned oats (uncooked), plus extra for sprinkling


  1. Preheat the oven to 350 degrees and grease a 12-cup muffin tin well. ]
  2. In a large bowl add the flour, baking powder and soda, cinnamon, and salt. Use a whisk to combine well.
  3. Make a well in the center of the dry mixture an add the egg, syrup or honey, milk, coconut oil, and vanilla. Stir until the mixture just comes together (don’t over mix). Add the zucchini and oats and stir to combine.
  4. Divide the mixture evenly between the 12 muffin cups. Sprinkle a few additional oats on eat muffin if desired. Bake for 16-20 minutes until a toothpick inserted into the center comes out clean. Remove from the oven and let the muffins cool on a wire rack for 5 minutes. Remove from the muffin pan and serve warm, at room temperature.

  • Category: Breakfast
  • Method: Oven
  • Cuisine: American
Nutrition Information: YIELD: 12 SERVING SIZE: 1 muffin
Amount Per Serving: Calories: 164.4 Fat: 6.8g Cholesterol: 15.6mg Sodium: 214.1mg Carbohydrates: 23.1g Sugars: 8.8g Protein: 3.4g Vitamin A: 8.4µg Vitamin C: 2.8mg

Keywords: healthy zucchini muffin recipe, homemade zucchini muffins, whole grain muffin recipe, whole grain zucchini muffin recipe, healthy breakfast recipe, easy make ahead breakfast recipe, best breakfast muffin recipe, healthy breakfast muffin recipe

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I hope you try these Healthy Whole Grain Zucchini Muffins and make them again and again. I know they’ll become a fast favorite in your home, just like they have in mine.

Whole Grain Zucchini Muffins

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about me

About Melissa

I have a lot going on, and I’d much rather spend my time enjoying my messes than fretting about what I’m going to make for dinner. Over the past few years, I’ve nailed down a few strategies that helped me keep my kitchen running like a well-oiled machine, so I started Bless This Mess to help other mess-loving parents solve the nightly dinner delimma—no stress, no drama, just really great food your whole family will love. Read more...

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Fantastic! Used Pastry flour which worked great and added a couple tbsp flax seeds and couple of sliced almonds. Super easy and baked up beautifully. As a thought, you may want to reference not needing to remove excess moisture in the recipe itself. I had the cheese cloth at the ready before I decided to check comments for that guidance. It’s probably truly a no-brainer, but would be helpful if someone prints the recipe and doesn’t have the comments. 🙂

Thanks for Sharing!

Should I squeeze out excess moisture from zucchini before adding it?

Can you use white flour instead?

These are DELICIOUS! Tried it this past week and they made a GREAT quick breakfast!

Great recipe for kids lunches! A little more dense than regular muffin recipes but still tasty!

This looks absolutely delicious and I can’t believe it’s totally healthy – yum!

These sounds and look amazzing! I have been wanting to try my hand at baking with zucchini like this and this looks like a great way to do that!! Any way I can sneak some healthyness into something without my kids knowing is a high-five to myself (and to you too 🙂 )! Haha!! Hope you have a great weekend!

Bless This Mess - About Me

I’m Melissa, and I want to help you feed your family wholesome food.

As a hobby farmer and mom of five, I’m all about keeping it simple in the kitchen. I want healthy meals that feed my family well, and then I want to get back to my (messy) life. Let’s work together to find something yummy for your dinner table.