Healthy Applesauce Cookies

5 from 10 reviews

This Healthy Applesauce Cookie recipe is delicious & easy! Your kids can help you make & devour the cookies! They’re great for a busy morning breakfast too.

I’ve created a lot of healthy cookies recipes. Check these ones out:Healthy Vegan Breakfast Cookies, Healthy Coconut No-Bake Cookies and Healthy Peanut Butter Chocolate Chip Cookies.

This Healthy Applesauce Cookie recipe is delicious & easy! Your kids can help you make & devour the cookies! They're great for a busy morning breakfast too.

Healthy Applesauce Cookie

My children and I have spent many a messy morning in the kitchen baking, creating, cooking, and just enjoying being together. I often have a helper when I make whole wheat bread for the week, when I’m making a batch of our forever favorite oatmeal balls, or when I’m peeling potatoes or carrots for a meal. I love being in the kitchen with my little people. The kitchen is my happy place and I’m more than excited to encourage that same love in my kids.

Applesauce Cookies Recipe

I have a few recipes that I let the kids make on a regular basis and these simple and healthy applesauce cookies are one of those. The recipe is delicious and very forgiving, and I always have everything they need on hand. My applesauce cookies are made with whole grains, natural sweetener (honey), and it’s also dairy-free! So I don’t even feel bad when they have a few for breakfast on Saturday morning if I’m trying to stay in bed a little later. Long live the healthy, satisfying, and delicious applesauce cookie.

Does the chilling time really matter in a recipe?

This step is very important. Don’t skip the chilling time, the whole grains in this recipe need some time for absorb the liquids before being baked.

Can I make this cookie recipe gluten free?

I think if you were to replace the whole wheat flour with oat flour it would still work and then you could make this recipe gluten free (with compliant chocolate chips) if that is a need for your family.

Applesauce Cookies Recipe


Applesauce Cookies Recipe

Healthy Applesauce Cookies

  • Author: Melissa Griffiths - Bless this Mess
  • Prep Time: 10 mins
  • Cook Time: 11 mins
  • Total Time: 21 minutes
  • Yield: 2 dozen cookies 1x


This Healthy Applesauce Cookie recipe is delicious & easy! Your kids can help you make & devour the cookies! They’re great for a busy morning breakfast too.



  • 1 cup unsweetened applesauce
  • 1/4 cup melted coconut oil
  • 1 large egg
  • 1/3 cup honey
  • 1 cup uncooked oats
  • 1 cup whole wheat flour
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon salt
  • 2 teaspoons cinnamon
  • 12 cups chocolate chips


  1. Preheat the oven to 325 degrees. In a large bowl, add the applesauce, coconut oil, egg, and honey, and mix to combine well.
  2. Add the oats, whole wheat flour, baking soda, salt, and cinnamon. Stir to combine well. Add the chocolate chips and stir to combine.
  3. Refrigerate the dough for 10 minutes (this give the oats a little time to absorb some of the liquid).
  4. Use a cookie scoop or two spoons to place a rounded tablespoon of dough on a parchment or baking mat lined cookie sheet.
  5. Bake for 11-13 minutes, until the edges of the cookies are lightly browned and the center is set.
  6. Remove from the oven and let the cookies cool on the sheet for 5 minutes.


  • Don’t skip the chilling time, the whole grains in this recipe need some time for absorb the liquids before being baked.
  • If you have cinnamon chips, they are really good in this recipe.
  • I think if you were to replace the whole wheat flour with oat flour it would still work and then you could make this recipe gluten free (with compliant chocolate chips) if that is a need for your family.
  • I have tried this with gluten free flour and  it worked well with a 1 to 1 gluten free baking blend.
  • Category: Dessert
  • Method: Oven
  • Cuisine: American

Keywords: applesauce cookies recipe, healthy cookies recipe, baking with applesauce, applesauce dessert recipe

Check out these yummy cookie recipes too:

This Healthy Applesauce Cookie recipe is delicious, easy and I know you will enjoy them.

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38 Recipes for Busy Moms
50 Responses
  1. Raphael

    I made these today and I have to hold myself back from eating the whole batch lol. I did make several changes; I used an extra egg (long story), omitted the coconut oil (too much sat. fat), and since I didn’t have premade applesauce I made my own with some plain simmered apples. My applesauce was mashed instead of pureed so it left some apple chunks, they tasted great in the finished cookie! I added pumpkin pie spice, chocolate and butterscotch chips, and flax seeds. Overall they were very soft and chewy but held together well, had a great light apple sweetness, and were super easy to make! Currently very happy and full : -)

    1. Melissa

      Those changes sound AMAZING! I’m totally going to try it with chunky homemade applesauce, that’s such a great idea. Thank you for sharing the tips and tricks with us.

  2. Kerri Wojciechowski

    I love all the healthy ingredients that this recipe called for. I made these cookies with granola though. They were delicious, but I would have liked them crunchy. Is there anyway I could have done that? I will definitely use this recipe again ….hopefully crunchy though!!

    1. Melissa

      Without much oil or butter in this, the crunch is going to be hard to get. You might want to lower the cooking temperature by 25 degrees and then bake them for a longer time to see if they’ll crisp up for you.

    1. Melissa

      I only do if they are on a single layer, if you put them in the freezer with layers of parchment in between, or if you freeze them individually and then place them frozen into a zipper topped baggie for storage. You just don’t want them to stick together when freezing, they’d be so annoying to get apart!

    1. Melissa

      That sounds so good and thank you for letting us know about the oat flour! That’s a great and easy way to make these gluten free!

  3. cyn

    this recipe is a keeper 🙂

    I made the following tweaks:
    -pure maple syrup for honey
    -chunky applesauce
    -butter instead of coconut oil
    -an additional 1/4 cup flour (I used banana for the extra)
    -1 cup of ‘salted caramel’ flavor chips
    -increased baking time to about 25 minutes

    these are absolutely *delightful*! they’re like mini apple cakes, and I love that they aren’t too sweet! I definitely plan to make them again, with walnuts instead of chips, or possibly pieces of crystallized ginger. SO. GOOD!

    1. Melissa

      This sounds AMAZING!!! I’m going to try your version asap! Thank you for sharing it friend, and I know what salted caramel chips you speak of, SO GOOD!

  4. Anne

    Great recipe! Are they supposed to be bread consistency when they finish baking or should they have more of a cookie texture?

  5. Ashley

    I just made these today! Instead of whole wheat flour I used I cup oat flour! I also put 1/2 cup of choc chips and 1/2 raisins and the whole family loved them! They were so soft almost like a cookie cake!

  6. Delicious cookies. I didn’t have wheat flour, so I substituted about half white and half powdered (ground up in a coffee grinder) oatmeal. I also didn’t have coconut oil, so I substituted about half oil and half butter. I reduced the chocolate chips to 1 handful and added raisins too. My husband will be eating these as fishing trip lunch/snacks. Thanks for the recipe! Love it! My husband did too!

    1. Melissa

      Ohhh, love all of you changes and substitutions. Thank you for sharing what worked, the raisins sound delicious.

  7. I’m still learning from you, as I’m trying to reach my goals. I definitely enjoy reading everything that is written on your blog.Keep the tips coming. I loved it!

    1. Melissa

      I’d try adding less oats next time. Yours were probably just a little thick, maybe your applesauce was less runny than mine.

  8. Stephanie Hum

    My husband and 1 son loves these cookies! My husband needs to go on a low fat diet, while my stomach issues prevent me from eating fatty, sugary foods. This was perfect. My oldest son thought they were too chewy so not his type, lol. I substituted with gluten free flour and was still good. I do want to know what is the shelf life and should I refrigerate the cookies or just air tight container will do? Thank you. You are a God send. 🙂

    1. Melissa

      I’m so glad you love them! I think, because these are really moist, that they are better off in the fridge. A day or two out, but any longer than that I’d stick them in the fridge. So glad you can use GF flour too!

    1. Melissa

      Bake them 2-3 minute longer next time! If the dough is super soupy (it’s definitely wet, but if it’s full on soupy) try adding 1/4 more flour too. I’d try them again, they really are one of our favorites!

  9. Krysta

    I have made this a few times. These are great. I have changed the recipe a few times just to experiment and to see how far I can go on the healthiness of them. I find that the egg can easily be replaced with a “flax egg” and the oil can be replaced with homemade peanut butter or almond butter. Also, a 1/4 cup of honey makes them plenty sweet enough. I tried using zucchini instead of apple yesterday and although they were good, carrot, pumpkin, or banana work better in place of the apole. Great recipe as is too though!

  10. Marseille

    I need to let my kids help in the kitchen more…as you said, “not afraid to get messy is in a mom’s job description.” I need to work on that. We need more messipes in our lives.

  11. Rhoda

    Messipies… There are definitely lots of them around here:) we have 5 children and they all love to help me in the kitchen. We love cooking anything yummy and baking super soft chocolate chip cookies!

  12. Looks great, I think I’ll try this out with olive oil instead of coconut (not supposed to be having much saturated fat), and I’ll report back how it works out.

  13. Courtney Wilson

    I feel like everything I make is a messier, lol. I love making no bake cookies, homemade rolls, and caramel corn to name a few.

  14. Belinda

    When my daughter was in 3rd grade she loved to make blueberry muffins. Now that was a “messipe” for disaster if there ever was one! I’ll certainly try this healthy cookie recipe. Looks yummy as well as healthy. Thanks!

  15. deb c

    I make a mess anytime I am in the kitchen….but my favorite messipe is chocolate oatmeal peanut butter and mm energy balls……totally addicted! I love the old Palmolive commercials with Madge…she was special!

  16. Summer p

    I did know Freddy P was a foodie. He’s married to Sarah Michelle Geller and she created Food stirs. Pretty cool. And these cookies sound good. And that kid of yours sure is pretty! 🙂

  17. katie w

    These look super good! And oh my gosh, I love your new site so much! The dinner tool at the top is so fantastic!!! For some reason, your new posts weren’t showing up in my blog-reader (I use Feedly). I reentered your site in it, maybe it was having a glitch for some reason. Can’t wait to try these!

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Bless This Mess - About Me

I’m Melissa, and I want to help you feed your family wholesome food.

As a hobby farmer and mom of five, I’m all about keeping it simple in the kitchen. I want healthy meals that feed my family well, and then I want to get back to my (messy) life. Let’s work together to find something yummy for your dinner table.

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